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Import Bio.Basics

Posted on August 16, 2019August 16, 2019 by Ritu Kundu

This post is meant to act as an index of the posts and resources which formed the basis of my “biological” understanding.

DISCLAIMER: My posts here are more or less only a compilation summarising what I learned from various resources (also listed in this post and also cited in specific posts). More often than not, these are in the same words as those I read or heard. I am not trying to reinvent the wheel or to dress it up differently to claim it my own.

My Posts

  • Bio.Basics.GroundRules : This post is meant to lay some ground rules by describing some preliminary concepts that most of us might have learned in high school.
  • Bio.Basics.Genome : In this post, I have just re-published a part of my PhD thesis that kind of summarises the “genome” part that was sufficient for me, a CS type of person, to get started with the algorithms in bioinformatics.

Resources

  • To know the required biology for being a rookie bioinfomatician using purely the computer science framework and terminology (without the depth and “burden” of real biochemical processes), Chapter 1 of the book “Genome-Scale Algorithm Design” is an excellent starting point. The whole book itself is of great value when it comes to understanding the algorithmic foundations behind the widely-used tools in bioinformatics.
  • To brush up the biology concept that one may have learned in high school, this course proves out to be a good resource. Specifically, modules 3 (Important Biological Macromolecules), 4 (Cellular Structure), and 8 to 11 (Cell Division; DNA Structure and Replication; DNA Transcription and Translation; Gene Expression) are worth having a cursory look.
  • To really learn Biology 101, I found this course–Introduction to Biology: The Secret of Life–on edX by Prof. Eric Lander to be extremely helpful. Especially, lectures from Week 5 to Week 9 (DNA and replication; Transcription, Translation, and Variations; Recombinant DNA, Genomics).
  • To quickly glance through terminology and glossary of the terms used in bioinformatics, this link serves the purpose.
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